RNA-seq Workflows and Tools
2 Outline for comparison of RNA-seq tools in this study. | Download Scientific Diagram
COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis | Scientific Reports
cellxgene VIP – a web-based tool for the exploration and visualization of scRNA-seq data | RNA-Seq Blog
Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures | Nature Methods
Limitation of alignment-free tools in total RNA-seq quantification | RNA-Seq Blog
Differential gene expression analysis tools exhibit substandard performance for long non-coding RNA–sequencing data | bioRxiv
Processing single-cell RNA-seq data for dimension reduction-based analyses using open-source tools - ScienceDirect
Quantification of transcript abundance using Salmon | Introduction to RNA- Seq using high-performance computing - ARCHIVED
Frontiers | Unleashing the power within short-read RNA-seq for plant research: Beyond differential expression analysis and toward regulomics
SMARTer smRNA-Seq Kit for Illumina—sequence small RNAs with high sensitivity and minimal bias
IJMS | Free Full-Text | Evaluation of Seven Different RNA-Seq Alignment Tools Based on Experimental Data from the Model Plant Arabidopsis thaliana
IJMS | Free Full-Text | Transcriptome Analysis Based on RNA-Seq in Understanding Pathogenic Mechanisms of Diseases and the Immune System of Fish: A Comprehensive Review
Alignment with STAR | Introduction to RNA-Seq using high-performance computing - ARCHIVED
RNAseq-tutorial - Services for Research - CSC Company Site
RNA sequencing: new technologies and applications in cancer research | Journal of Hematology & Oncology | Full Text
Review of RNA-Seq Data Analysis Tools | RNA-Seq Blog
Comparison of Bulk RNA-seq Data Visualization Tools
638 Free RNA-seq Analysis Tools - Software and Resources
Differential gene expression analysis tools exhibit substandard performance for long non-coding RNA-sequencing data | Genome Biology | Full Text
GEN Tools - Gene Expression Nebulas
SingleCellNet: a computational tool to classify single cell RNA-Seq data across platforms and across species | bioRxiv
![PDF] A comprehensive overview of computational tools for RNA-seq analysis | Semantic Scholar](https://d3i71xaburhd42.cloudfront.net/76ec60bf27d5c242d8750674c44295b8bf56f413/44-Figure5-1.png "PDF] A comprehensive overview of computational tools for RNA-seq analysis | Semantic Scholar")
PDF] A comprehensive overview of computational tools for RNA-seq analysis | Semantic Scholar
Comparing the Most Popular Tools and Pipelines for Bulk RNA-Seq
A comparative study of RNA-Seq and microarray data analysis on the two examples of rectal-cancer patients and Burkitt Lymphoma cells | PLOS ONE
